Date: March 28, 2024 1:21 PM

Online Data Repositories and Databases

OpenNEURO

This is where some Holmes Lab data repositories are stored, including the Transdiagnostic Connectome Project.

To upload data to OpenNeuro, data needs to be in BIDS format.

This is where big datasets like the Human Connectomes Project (and all it’s substudies), ABCD, BANDA, NAPLS, and other large consortium studies have their data. There are also many smaller datasets on here. It is maintained by the United States government. This is where data from the Conte Latent Cause Inference project goes.

To upload data to the NDA, there are many requirements for documentation and formatting.
To access data from NDA, follow this tutorial.

Synapse.org

This is another site which hosts much open-source data, including neuroimaging data.

Allen Brain Atlas

Allen Brain Atlas hosts much brain-related open-source data. Allen focuses on genetic data and mapping neuron-level circuitry.

UK Biobank

UK biobank is a large neuroimaging dataset.

To get access to UK Biobank data, follow the below steps:

Sign up for an account and file
Fill out your profile information and institutional affiliation
Wait for your registration to be activated
Ask PI to add you to the “Ethics” ie the IRB for the site-access for your institution

Data Resource Sites: Neuroimaging

These are sites which are relevant to datasets, but aren’t directly data hosting sites. They contain tutorials, visualization software, analysis tools, dataset searches, and other useful resources.

Neurovault

A public repository of unthresholded statistical maps, parcellations, and atlases of the brain.
searchable & conglomerated by associated keywords (from studies), areas, and coordinates

NeuroImaging PREProcessing toolS (NiPreps)