Connecting to Amarel in Terminal

  1. Connect to VPN on Cisco Anyconnect App Tutorial

    1. fill in on Cisco Anyconnect app:
      1. vpn.rutgers.edu
      2. NetID password
      3. DUO mobile password
    2. or webpage: https://vpn1.rutgers.edu/+CSCOE+/logon.html#form_title_text
  2. Now, in your terminal…
    1. On terminal or shell scripting application, Enter ssh netID@amarel.rutgers.edu (replace with your NetID)
    2. prompts for password- Enter NetID password
  3. Activate Environment
    1. conda activate /projects/community/holmesenv

Connecting to Amarel Online Jupyter Notebook

  1. Connect to VPN
  2. Start a jupyter notebook etc. session https://ondemand.hpc.rutgers.edu
    1. Go to https://ondemand.hpc.rutgers.edu for the GUI
    2. Go to dashboard → interactive apps → Personal Jupyter

      Recommended Settings Partition: p_dz268_1 (CAHBIR Partition) Hours: 72 (max is 8064) Conda Path: projects/community/holmesenv Conda Environment: holmesenv

  3. Launch session
  4. In Jupyter Notebook, if necessary, make sure you’re in the holmesenv conda
    1. Select in toolbar Kernel>Change kernel>holmesenv